STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAF4SR-related CTD associated factor 4. (1134 aa)    
Predicted Functional Partners:
SCAF8
SR-related CTD associated factor 8.
   
  
 0.925
SETX
Senataxin.
   
 
 0.918
ENSCWAP00000004852
annotation not available
   
 
 0.912
EXOSC10
Exosome component 10.
   
 
 0.887
DROSHA
Drosha ribonuclease III.
   
 
 0.863
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.852
POLR2B
RNA polymerase II subunit B.
   
 
 0.847
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 
 0.834
POLR2C
RNA polymerase II subunit C.
    
 
 0.834
MTREX
Mtr4 exosome RNA helicase.
   
 
 0.830
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.