SPIN3 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SPIN3

Spindlin family member 3. (157 aa)

Predicted Functional Partners:

SPINDOC

0.920

YRDC

0.828

CGGBP1

0.825

ENSCWAP00000003051

0.806

TOPORS

0.780

ENSCWAP00000017439

0.776

SSRP1

0.514

SETDB1

0.487

TDRD3

0.453

MYOZ1

0.433

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGGBP1	ENSCWAP00000003051	ENSCWAP00000021992	ENSCWAP00000003051	CGG triplet repeat binding protein 1.	annotation not available	0.909
CGGBP1	SPIN3	ENSCWAP00000021992	ENSCWAP00000003064	CGG triplet repeat binding protein 1.	Spindlin family member 3.	0.825
ENSCWAP00000003051	CGGBP1	ENSCWAP00000003051	ENSCWAP00000021992	annotation not available	CGG triplet repeat binding protein 1.	0.909
ENSCWAP00000003051	ENSCWAP00000017439	ENSCWAP00000003051	ENSCWAP00000017439	annotation not available	annotation not available	0.724
ENSCWAP00000003051	SPIN3	ENSCWAP00000003051	ENSCWAP00000003064	annotation not available	Spindlin family member 3.	0.806
ENSCWAP00000003051	SPINDOC	ENSCWAP00000003051	ENSCWAP00000021428	annotation not available	Spindlin interactor and repressor of chromatin binding.	0.919
ENSCWAP00000003051	SSRP1	ENSCWAP00000003051	ENSCWAP00000009028	annotation not available	Structure specific recognition protein 1.	0.729
ENSCWAP00000003051	TOPORS	ENSCWAP00000003051	ENSCWAP00000023827	annotation not available	TOP1 binding arginine/serine rich protein.	0.724
ENSCWAP00000003051	YRDC	ENSCWAP00000003051	ENSCWAP00000008429	annotation not available	yrdC N6-threonylcarbamoyltransferase domain containing.	0.918
ENSCWAP00000017439	ENSCWAP00000003051	ENSCWAP00000017439	ENSCWAP00000003051	annotation not available	annotation not available	0.724
ENSCWAP00000017439	SPIN3	ENSCWAP00000017439	ENSCWAP00000003064	annotation not available	Spindlin family member 3.	0.776
MYOZ1	SPIN3	ENSCWAP00000029061	ENSCWAP00000003064	Myozenin 1.	Spindlin family member 3.	0.433
SETDB1	SPIN3	ENSCWAP00000009466	ENSCWAP00000003064	SET domain bifurcated histone lysine methyltransferase 1.	Spindlin family member 3.	0.487
SPIN3	CGGBP1	ENSCWAP00000003064	ENSCWAP00000021992	Spindlin family member 3.	CGG triplet repeat binding protein 1.	0.825
SPIN3	ENSCWAP00000003051	ENSCWAP00000003064	ENSCWAP00000003051	Spindlin family member 3.	annotation not available	0.806
SPIN3	ENSCWAP00000017439	ENSCWAP00000003064	ENSCWAP00000017439	Spindlin family member 3.	annotation not available	0.776
SPIN3	MYOZ1	ENSCWAP00000003064	ENSCWAP00000029061	Spindlin family member 3.	Myozenin 1.	0.433
SPIN3	SETDB1	ENSCWAP00000003064	ENSCWAP00000009466	Spindlin family member 3.	SET domain bifurcated histone lysine methyltransferase 1.	0.487
SPIN3	SPINDOC	ENSCWAP00000003064	ENSCWAP00000021428	Spindlin family member 3.	Spindlin interactor and repressor of chromatin binding.	0.920
SPIN3	SSRP1	ENSCWAP00000003064	ENSCWAP00000009028	Spindlin family member 3.	Structure specific recognition protein 1.	0.514