UCP3 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UCP3

Uncoupling protein 3. (308 aa)

Predicted Functional Partners:

PPARGC1A

0.665

PLIN1

0.657

PDK4

0.653

NPY

0.648

LEP

0.638

PPARG

0.621

CIDEA

0.611

SLC2A4

0.602

CPT1B

0.598

POMC

0.594

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIDEA	CPT1B	ENSCWAP00000021757	ENSCWAP00000026933	Cell death inducing DFFA like effector a.	Carnitine palmitoyltransferase 1B.	0.615
CIDEA	LEP	ENSCWAP00000021757	ENSCWAP00000004626	Cell death inducing DFFA like effector a.	Leptin.	0.598
CIDEA	PLIN1	ENSCWAP00000021757	ENSCWAP00000018418	Cell death inducing DFFA like effector a.	Perilipin 1.	0.685
CIDEA	PPARG	ENSCWAP00000021757	ENSCWAP00000022786	Cell death inducing DFFA like effector a.	Peroxisome proliferator activated receptor gamma.	0.647
CIDEA	PPARGC1A	ENSCWAP00000021757	ENSCWAP00000028762	Cell death inducing DFFA like effector a.	PPARG coactivator 1 alpha.	0.734
CIDEA	SLC2A4	ENSCWAP00000021757	ENSCWAP00000004134	Cell death inducing DFFA like effector a.	Solute carrier family 2 member 4.	0.487
CIDEA	UCP3	ENSCWAP00000021757	ENSCWAP00000003110	Cell death inducing DFFA like effector a.	Uncoupling protein 3.	0.611
CPT1B	CIDEA	ENSCWAP00000026933	ENSCWAP00000021757	Carnitine palmitoyltransferase 1B.	Cell death inducing DFFA like effector a.	0.615
CPT1B	PDK4	ENSCWAP00000026933	ENSCWAP00000006282	Carnitine palmitoyltransferase 1B.	Pyruvate dehydrogenase kinase 4.	0.656
CPT1B	PLIN1	ENSCWAP00000026933	ENSCWAP00000018418	Carnitine palmitoyltransferase 1B.	Perilipin 1.	0.432
CPT1B	PPARG	ENSCWAP00000026933	ENSCWAP00000022786	Carnitine palmitoyltransferase 1B.	Peroxisome proliferator activated receptor gamma.	0.560
CPT1B	PPARGC1A	ENSCWAP00000026933	ENSCWAP00000028762	Carnitine palmitoyltransferase 1B.	PPARG coactivator 1 alpha.	0.633
CPT1B	SLC2A4	ENSCWAP00000026933	ENSCWAP00000004134	Carnitine palmitoyltransferase 1B.	Solute carrier family 2 member 4.	0.588
CPT1B	UCP3	ENSCWAP00000026933	ENSCWAP00000003110	Carnitine palmitoyltransferase 1B.	Uncoupling protein 3.	0.598
LEP	CIDEA	ENSCWAP00000004626	ENSCWAP00000021757	Leptin.	Cell death inducing DFFA like effector a.	0.598
LEP	NPY	ENSCWAP00000004626	ENSCWAP00000000869	Leptin.	Neuropeptide Y.	0.984
LEP	PLIN1	ENSCWAP00000004626	ENSCWAP00000018418	Leptin.	Perilipin 1.	0.755
LEP	POMC	ENSCWAP00000004626	ENSCWAP00000007469	Leptin.	Proopiomelanocortin.	0.984
LEP	PPARG	ENSCWAP00000004626	ENSCWAP00000022786	Leptin.	Peroxisome proliferator activated receptor gamma.	0.787
LEP	PPARGC1A	ENSCWAP00000004626	ENSCWAP00000028762	Leptin.	PPARG coactivator 1 alpha.	0.693