STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCCPDHSaccharopine dehydrogenase (putative). (429 aa)    
Predicted Functional Partners:
TMX3
Thioredoxin related transmembrane protein 3.
      
 0.684
AASS
Aminoadipate-semialdehyde synthase.
     
  0.649
ALDH5A1
Aldehyde dehydrogenase 5 family member A1.
   
 
  0.622
TMX4
Thioredoxin related transmembrane protein 4.
   
  
 0.614
TCERG1L
Transcription elongation regulator 1 like.
   
  
 0.601
DGCR2
DiGeorge syndrome critical region gene 2.
     
 0.593
OLA1
Obg like ATPase 1.
     
  0.586
GTPBP2
GTP binding protein 2.
     
  0.586
SPARC
Secreted protein acidic and cysteine rich.
     
  0.583
TMEM88B
Transmembrane protein 88B.
      
 0.583
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.