STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCA1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (1044 aa)    
Predicted Functional Partners:
BAZ1B
Bromodomain adjacent to zinc finger domain 1B.
   
 0.992
RSF1
Remodeling and spacing factor 1.
   
 0.989
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
   
 0.980
POLE3
DNA polymerase epsilon 3, accessory subunit.
    
 0.974
BAZ2A
Bromodomain adjacent to zinc finger domain 2A.
    
 0.968
CECR2
CECR2 histone acetyl-lysine reader.
    
 0.967
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.958
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.958
BPTF
Bromodomain PHD finger transcription factor.
   
 0.958
CHRAC1
Chromatin accessibility complex subunit 1.
    
 0.952
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.