Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSDE1Cold shock domain containing E1. (844 aa)    
Predicted Functional Partners:
STRAP
Serine/threonine kinase receptor associated protein.
   
 
 0.980
PIK3CA
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha.
   
 0.953
BRAF
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.952
SOS1
SOS Ras/Rac guanine nucleotide exchange factor 1.
   
 0.951
RALBP1
ralA binding protein 1.
    
 0.950
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.949
PIK3CG
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma.
    
 0.940
AFDN
Afadin, adherens junction formation factor.
    
 0.938
PIK3CD
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta.
    
 0.936
RASSF5
Ras association domain family member 5.
    
 0.914
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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