Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMNB1Lamin B1. (586 aa)    
Predicted Functional Partners:
LMNA
Lamin A/C.
   
 0.988
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.977
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.966
ENSCWAP00000017881
annotation not available
    
 0.960
ENSCWAP00000000551
annotation not available
    
 0.945
ENSCWAP00000000583
annotation not available
    
 0.945
TMPO
Thymopoietin.
   
 0.939
CASP6
Caspase 6.
    
 0.939
NUP153
Nucleoporin 153.
    
 
 0.923
LEMD3
LEM domain containing 3.
    
 0.915
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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