N4BP1 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

N4BP1

NEDD4 binding protein 1. (897 aa)

Predicted Functional Partners:

UBB

0.931

ENSCWAP00000019878

0.872

RC3H2

0.824

SEC62

0.754

RC3H1

0.754

IKBKG

0.752

NEDD4

0.718

ENSCWAP00000014093

0.717

CASP8

0.717

SLC35A2

0.701

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP8	IKBKG	ENSCWAP00000014220	ENSCWAP00000000150	Caspase 8.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.541
CASP8	N4BP1	ENSCWAP00000014220	ENSCWAP00000003391	Caspase 8.	NEDD4 binding protein 1.	0.717
CASP8	UBB	ENSCWAP00000014220	ENSCWAP00000016064	Caspase 8.	Ubiquitin B.	0.539
ENSCWAP00000014093	IKBKG	ENSCWAP00000014093	ENSCWAP00000000150	annotation not available	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.541
ENSCWAP00000014093	N4BP1	ENSCWAP00000014093	ENSCWAP00000003391	annotation not available	NEDD4 binding protein 1.	0.717
ENSCWAP00000014093	UBB	ENSCWAP00000014093	ENSCWAP00000016064	annotation not available	Ubiquitin B.	0.539
ENSCWAP00000019878	N4BP1	ENSCWAP00000019878	ENSCWAP00000003391	annotation not available	NEDD4 binding protein 1.	0.872
ENSCWAP00000019878	NEDD4	ENSCWAP00000019878	ENSCWAP00000026212	annotation not available	NEDD4 E3 ubiquitin protein ligase.	0.426
ENSCWAP00000019878	UBB	ENSCWAP00000019878	ENSCWAP00000016064	annotation not available	Ubiquitin B.	0.965
IKBKG	CASP8	ENSCWAP00000000150	ENSCWAP00000014220	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Caspase 8.	0.541
IKBKG	ENSCWAP00000014093	ENSCWAP00000000150	ENSCWAP00000014093	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	annotation not available	0.541
IKBKG	N4BP1	ENSCWAP00000000150	ENSCWAP00000003391	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	NEDD4 binding protein 1.	0.752
IKBKG	UBB	ENSCWAP00000000150	ENSCWAP00000016064	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Ubiquitin B.	0.591
N4BP1	CASP8	ENSCWAP00000003391	ENSCWAP00000014220	NEDD4 binding protein 1.	Caspase 8.	0.717
N4BP1	ENSCWAP00000014093	ENSCWAP00000003391	ENSCWAP00000014093	NEDD4 binding protein 1.	annotation not available	0.717
N4BP1	ENSCWAP00000019878	ENSCWAP00000003391	ENSCWAP00000019878	NEDD4 binding protein 1.	annotation not available	0.872
N4BP1	IKBKG	ENSCWAP00000003391	ENSCWAP00000000150	NEDD4 binding protein 1.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.752
N4BP1	NEDD4	ENSCWAP00000003391	ENSCWAP00000026212	NEDD4 binding protein 1.	NEDD4 E3 ubiquitin protein ligase.	0.718
N4BP1	RC3H1	ENSCWAP00000003391	ENSCWAP00000024693	NEDD4 binding protein 1.	Ring finger and CCCH-type domains 1.	0.754
N4BP1	RC3H2	ENSCWAP00000003391	ENSCWAP00000022627	NEDD4 binding protein 1.	Ring finger and CCCH-type domains 2.	0.824