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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BHLHA9Basic helix-loop-helix family member a9. (224 aa)    
Predicted Functional Partners:
RD3L
Retinal degeneration 3 like.
      
 0.743
C4orf46
Chromosome 4 open reading frame 46.
      
 0.742
TRARG1
Trafficking regulator of GLUT4 (SLC2A4) 1.
      
 0.655
OR8B4
Olfactory receptor family 8 subfamily B member 4 (gene/pseudogene).
      
 0.597
LRRC56
Leucine rich repeat containing 56.
      
 0.597
ZNF18
Zinc finger protein 18.
      
 0.597
FBXO48
F-box protein 48.
      
 0.597
ENSCWAP00000003995
annotation not available
      
 0.566
ZNF684
Zinc finger protein 684.
      
 0.564
CACNA1H
Calcium voltage-gated channel subunit alpha1 H.
      
 0.530
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.