STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHCTF1AT-hook containing transcription factor 1. (2312 aa)    
Predicted Functional Partners:
NUP133
Nucleoporin 133.
   
 0.998
NUP107
Nucleoporin 107.
    
 0.997
NUP160
Nucleoporin 160.
   
 0.996
NUP37
Nucleoporin 37.
    
 0.994
NUP98
Nucleoporin 98.
   
 0.993
NUP85
Nucleoporin 85.
    
 0.992
SEH1L
SEH1 like nucleoporin.
   
 0.991
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.991
NUP43
Nucleoporin 43.
    
 0.984
ENSCWAP00000000320
annotation not available
    
 0.984
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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