Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIF1BYip1 interacting factor homolog B, membrane trafficking protein. (309 aa)    
Predicted Functional Partners:
YIPF4
Yip1 domain family member 4.
   
 
 0.905
YIPF5
Yip1 domain family member 5.
   
 
 0.903
RABAC1
Rab acceptor 1.
   
 
 0.896
YIPF7
Yip1 domain family member 7.
   
 
 0.867
SELENOS
Selenoprotein S.
   
 
 0.836
MAEA
Macrophage erythroblast attacher.
   
 
 0.836
DERL1
Derlin 1.
   
   0.797
TMED10
Transmembrane p24 trafficking protein 10.
   
 
 0.793
RAB1B
RAB1B, member RAS oncogene family.
   
 
 0.788
RAB1A
RAB1A, member RAS oncogene family.
   
 
 0.788
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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