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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASC3CASC3 exon junction complex subunit. (703 aa)    
Predicted Functional Partners:
RBM8A
RNA binding motif protein 8A.
   
 0.999
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.999
UPF1
UPF1 RNA helicase and ATPase.
    
 0.999
ENSCWAP00000003981
annotation not available
    
 0.998
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.995
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.991
ENSCWAP00000011783
annotation not available
    
 0.991
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 0.991
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.990
YJU2
YJU2 splicing factor homolog.
    
  0.985
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.