Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CASC3CASC3 exon junction complex subunit. (703 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.999
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.996
RBM8A
RNA binding motif protein 8A.
   
 0.995
UPF1
UPF1 RNA helicase and ATPase.
    
 0.995
ENSCWAP00000003981
annotation not available
    
 0.986
PYM1
PYM homolog 1, exon junction complex associated factor.
    
 0.983
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.982
PNN
Pinin, desmosome associated protein.
    
 0.980
ENSCWAP00000011783
annotation not available
    
 0.980
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 0.980
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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