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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR1Ubiquitin protein ligase E3 component n-recognin 1. (1753 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.996
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 0.913
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
 0.909
UBB
Ubiquitin B.
   
 0.892
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.886
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 0.879
ATAD2B
ATPase family AAA domain containing 2B.
   
 0.870
PHIP
Pleckstrin homology domain interacting protein.
   
 
 0.866
WASHC4
WASH complex subunit 4.
   
    0.854
RC3H2
Ring finger and CCCH-type domains 2.
   
    0.852
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.