STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCWAP00000003596annotation not available (546 aa)    
Predicted Functional Partners:
PRPF38A
pre-mRNA processing factor 38A.
   
 
  0.894
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.888
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.838
ZC3H18
Zinc finger CCCH-type containing 18.
   
   0.838
RBM25
RNA binding motif protein 25.
   
  
 0.836
PNN
Pinin, desmosome associated protein.
   
    0.832
LUC7L
LUC7 like.
   
 
 0.783
ENSCWAP00000019908
annotation not available
   
 
 0.783
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.762
CLK3
CDC like kinase 3.
   
   0.751
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.