Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX20Sorting nexin 20. (317 aa)    
Predicted Functional Partners:
C19orf12
Chromosome 19 open reading frame 12.
    
   0.853
C18orf32
Chromosome 18 open reading frame 32.
      
 0.704
HECA
Hdc homolog, cell cycle regulator.
      
 0.619
NKD1
NKD inhibitor of WNT signaling pathway 1.
      
 0.600
SNX10
Sorting nexin 10.
     
 0.592
SLC17A9
Solute carrier family 17 member 9.
      
 0.591
ARL2BP
ADP ribosylation factor like GTPase 2 binding protein.
      
 0.590
GPATCH3
G-patch domain containing 3.
      
 0.589
PLEKHA8
Pleckstrin homology domain containing A8.
      
 0.587
RSPRY1
Ring finger and SPRY domain containing 1.
      
 0.587
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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