Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM23Tripartite motif containing 23. (574 aa)    
Predicted Functional Partners:
NME8
NME/NM23 family member 8.
    
 
 0.934
TBK1
TANK binding kinase 1.
   
 
 0.858
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 
 0.856
ARF6
ADP ribosylation factor 6.
   
 0.835
REPIN1
Replication initiator 1.
    
   0.834
ARL15
ADP ribosylation factor like GTPase 15.
   
 0.830
TRIM55
Tripartite motif containing 55.
    
 
 0.828
ENSCWAP00000003493
annotation not available
    
 
 0.819
PSMA1
Proteasome 20S subunit alpha 1.
    
   0.803
ENSCWAP00000002555
annotation not available
    
 
 0.786
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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