DONSON protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DONSON

Downstream neighbor of SON. (560 aa)

Predicted Functional Partners:

PRIM2

0.982

POLD2

0.973

ENSCWAP00000017381

0.952

POLD1

0.943

POLA1

0.931

ENSCWAP00000005308

0.926

TONSL

0.926

RPA1

0.913

PLRG1

0.905

SMARCAL1

0.902

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DONSON	ENSCWAP00000005308	ENSCWAP00000003631	ENSCWAP00000005308	Downstream neighbor of SON.	annotation not available	0.926
DONSON	ENSCWAP00000017381	ENSCWAP00000003631	ENSCWAP00000017381	Downstream neighbor of SON.	annotation not available	0.952
DONSON	PLRG1	ENSCWAP00000003631	ENSCWAP00000020631	Downstream neighbor of SON.	Pleiotropic regulator 1.	0.905
DONSON	POLA1	ENSCWAP00000003631	ENSCWAP00000000412	Downstream neighbor of SON.	DNA polymerase alpha 1, catalytic subunit.	0.931
DONSON	POLD1	ENSCWAP00000003631	ENSCWAP00000010985	Downstream neighbor of SON.	DNA polymerase delta 1, catalytic subunit.	0.943
DONSON	POLD2	ENSCWAP00000003631	ENSCWAP00000008143	Downstream neighbor of SON.	DNA polymerase delta 2, accessory subunit.	0.973
DONSON	PRIM2	ENSCWAP00000003631	ENSCWAP00000014464	Downstream neighbor of SON.	DNA primase subunit 2.	0.982
DONSON	RPA1	ENSCWAP00000003631	ENSCWAP00000001626	Downstream neighbor of SON.	Replication protein A1.	0.913
DONSON	SMARCAL1	ENSCWAP00000003631	ENSCWAP00000008492	Downstream neighbor of SON.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.	0.902
DONSON	TONSL	ENSCWAP00000003631	ENSCWAP00000028506	Downstream neighbor of SON.	Tonsoku like, DNA repair protein.	0.926
ENSCWAP00000005308	DONSON	ENSCWAP00000005308	ENSCWAP00000003631	annotation not available	Downstream neighbor of SON.	0.926
ENSCWAP00000005308	ENSCWAP00000017381	ENSCWAP00000005308	ENSCWAP00000017381	annotation not available	annotation not available	0.999
ENSCWAP00000005308	PLRG1	ENSCWAP00000005308	ENSCWAP00000020631	annotation not available	Pleiotropic regulator 1.	0.899
ENSCWAP00000005308	POLA1	ENSCWAP00000005308	ENSCWAP00000000412	annotation not available	DNA polymerase alpha 1, catalytic subunit.	0.999
ENSCWAP00000005308	POLD1	ENSCWAP00000005308	ENSCWAP00000010985	annotation not available	DNA polymerase delta 1, catalytic subunit.	0.998
ENSCWAP00000005308	POLD2	ENSCWAP00000005308	ENSCWAP00000008143	annotation not available	DNA polymerase delta 2, accessory subunit.	0.976
ENSCWAP00000005308	PRIM2	ENSCWAP00000005308	ENSCWAP00000014464	annotation not available	DNA primase subunit 2.	0.999
ENSCWAP00000005308	RPA1	ENSCWAP00000005308	ENSCWAP00000001626	annotation not available	Replication protein A1.	0.973
ENSCWAP00000005308	SMARCAL1	ENSCWAP00000005308	ENSCWAP00000008492	annotation not available	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.	0.909
ENSCWAP00000005308	TONSL	ENSCWAP00000005308	ENSCWAP00000028506	annotation not available	Tonsoku like, DNA repair protein.	0.914