Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RAPGEFL1Rap guanine nucleotide exchange factor like 1. (662 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.968
RRAD
RRAD, Ras related glycolysis inhibitor and calcium channel regulator.
    
 0.714
OGFOD3
2-oxoglutarate and iron dependent oxygenase domain containing 3.
      
 0.690
LIN52
Lin-52 DREAM MuvB core complex component.
      
 0.655
GARNL3
GTPase activating Rap/RanGAP domain like 3.
   
  0.652
RAPGEF5
Rap guanine nucleotide exchange factor 5.
    
 
 0.646
REM2
RRAD and GEM like GTPase 2.
    
 0.643
DIRAS2
DIRAS family GTPase 2.
    
 0.622
DIRAS3
DIRAS family GTPase 3.
    
 0.622
DIRAS1
DIRAS family GTPase 1.
    
 0.622
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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