Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYLDCYLD lysine 63 deubiquitinase. (953 aa)    
Predicted Functional Partners:
TRAF6
TNF receptor associated factor 6.
    
 0.998
RIPK1
Receptor interacting serine/threonine kinase 1.
    
 0.997
IKBKE
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
    
 0.994
SQSTM1
Sequestosome 1.
    
 0.993
TNFRSF1A
TNF receptor superfamily member 1A.
    
 0.992
TBK1
TANK binding kinase 1.
    
 0.991
ENSCWAP00000020892
annotation not available
    
 0.988
CLIP3
CAP-Gly domain containing linker protein 3.
    
 0.987
TNF
Tumor necrosis factor.
    
 0.987
BCL3
BCL3 transcription coactivator.
   
 0.986
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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