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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHKBP1SH3KBP1 binding protein 1. (704 aa)    
Predicted Functional Partners:
PACRGL
Parkin coregulated like.
      
 0.737
KCTD19
Potassium channel tetramerization domain containing 19.
    
 
 0.726
BTBD10
BTB domain containing 10.
      
 0.693
KCTD3
Potassium channel tetramerization domain containing 3.
  
 
  
0.645
RANGAP1
Ran GTPase activating protein 1.
   
  
 0.631
LRRC23
Leucine rich repeat containing 23.
    
 
 0.612
ENSCWAP00000025916
annotation not available
    
 
0.609
TTBK2
Tau tubulin kinase 2.
      
 0.597
MACC1
MET transcriptional regulator MACC1.
      
 0.566
GUCD1
Guanylyl cyclase domain containing 1.
      
 0.566
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.