STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB33ARAB33A, member RAS oncogene family. (237 aa)    
Predicted Functional Partners:
RAB33B
RAB33B, member RAS oncogene family.
   
  0.989
ATG16L1
Autophagy related 16 like 1.
    
 0.984
ATG16L2
Autophagy related 16 like 2.
    
 0.942
TBC1D25
TBC1 domain family member 25.
     
 0.938
ATG12
Autophagy related 12.
    
 
 0.903
ATG5
Autophagy related 5.
   
 
 0.885
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.850
TRAPPC8
Trafficking protein particle complex 8.
    
 0.830
STX5
Syntaxin 5.
    
 0.824
USO1
USO1 vesicle transport factor.
   
 0.822
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.