Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF23PHD finger protein 23. (420 aa)    
Predicted Functional Partners:
SUDS3
SDS3 homolog, SIN3A corepressor complex component.
    
 
 0.951
SAP30
Sin3A associated protein 30.
    
 
 0.889
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.887
SIN3A
SIN3 transcription regulator family member A.
    
 
 0.862
SIN3B
SIN3 transcription regulator family member B.
    
 
 0.862
HCCS
Holocytochrome c synthase.
    
   0.856
ARID4B
AT-rich interaction domain 4B.
   
 
 0.847
SAP130
Sin3A associated protein 130.
    
   0.825
ARID4A
AT-rich interaction domain 4A.
   
 
 0.794
ENSCWAP00000010360
annotation not available
    
 
 0.794
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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