Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GABARAPGABA type A receptor-associated protein. (117 aa)    
Predicted Functional Partners:
ATG4B
Autophagy related 4B cysteine peptidase.
   
 0.993
ATG3
Autophagy related 3.
  
 0.992
ATG7
Autophagy related 7.
   
 0.991
NBR1
NBR1 autophagy cargo receptor.
   
 0.989
SQSTM1
Sequestosome 1.
   
 0.985
ATG4A
Autophagy related 4A cysteine peptidase.
   
 0.983
ATG12
Autophagy related 12.
   
 0.981
TAX1BP1
Tax1 binding protein 1.
   
 0.973
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.969
GABRG2
Gamma-aminobutyric acid type A receptor gamma2 subunit.
    
 0.967
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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