STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCMT2Leucine carboxyl methyltransferase 2. (685 aa)    
Predicted Functional Partners:
TYW5
tRNA-yW synthesizing protein 5.
 
    
 0.944
PPP4C
Protein phosphatase 4 catalytic subunit.
   
 0.916
PPP2CA
Protein phosphatase 2 catalytic subunit alpha.
    
 0.835
PPP2CB
Protein phosphatase 2 catalytic subunit beta.
    
 0.835
GDA
Guanine deaminase.
    
 
 0.797
FGL1
Fibrinogen like 1.
    
   0.796
PTPA
Protein phosphatase 2 phosphatase activator.
    
 
 0.786
ENSCWAP00000021947
annotation not available
    
   0.776
RPUSD2
RNA pseudouridine synthase domain containing 2.
      
 0.775
ASB3
Ankyrin repeat and SOCS box containing 3.
      
 0.754
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.