STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTL5Retrotransposon Gag like 5. (574 aa)    
Predicted Functional Partners:
CEP290
Centrosomal protein 290.
    
   0.815
FANCM
FA complementation group M.
    
 0.786
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.704
TESMIN
Testis expressed metallothionein like protein.
    
 0.681
LIN54
Lin-54 DREAM MuvB core complex component.
    
 0.681
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.665
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.665
LIN9
Lin-9 DREAM MuvB core complex component.
    
 0.658
IQCB1
IQ motif containing B1.
    
 
 0.649
RBL2
RB transcriptional corepressor like 2.
    
  0.642
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.