STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX25Sorting nexin 25. (984 aa)    
Predicted Functional Partners:
CCDC177
Coiled-coil domain containing 177.
      
 0.754
ANKRD10
Ankyrin repeat domain 10.
      
 0.683
SNX14
Sorting nexin 14.
   
 
 0.671
ENSCWAP00000001804
annotation not available
    
 
 0.670
ENSCWAP00000015267
annotation not available
    
 
 0.670
SNX11
Sorting nexin 11.
     
 0.611
PMS1
PMS1 homolog 1, mismatch repair system component.
   
  
 0.604
ARHGAP33
Rho GTPase activating protein 33.
      
 0.589
RAB33A
RAB33A, member RAS oncogene family.
      
 0.587
ENSCWAP00000019827
annotation not available
      
 0.587
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.