Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTBP4Latent transforming growth factor beta binding protein 4. (1624 aa)    
Predicted Functional Partners:
TGFB1
Transforming growth factor beta 1.
    
 0.976
TGFB3
Transforming growth factor beta 3.
   
 0.894
THBS1
Thrombospondin 1.
   
 
 0.873
TGFB2
Transforming growth factor beta 2.
    
 0.865
MFNG
MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
    
 0.766
THBS2
Thrombospondin 2.
   
 
 0.721
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.638
NCSTN
Nicastrin.
    
 0.625
VWA1
Von Willebrand factor A domain containing 1.
   
 
 0.624
ADAM10
ADAM metallopeptidase domain 10.
    
 0.617
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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