STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IRX5Iroquois homeobox 5. (485 aa)    
Predicted Functional Partners:
IRX3
Iroquois homeobox 3.
   
  
 0.930
TSHZ3
Teashirt zinc finger homeobox 3.
    
 0.704
SRF
Serum response factor.
   
 
 0.621
SMYD1
SET and MYND domain containing 1.
    
 
 0.598
HOXD12
Homeobox D12.
    
 
 0.595
WNT9B
Wnt family member 9B.
      
 0.586
VSX1
Visual system homeobox 1.
    
 
 0.576
PBX1
PBX homeobox 1.
    
 0.563
PBX4
PBX homeobox 4.
    
 0.563
PBX3
PBX homeobox 3.
    
 0.563
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.