STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEPD1Endonuclease/exonuclease/phosphatase family domain containing 1. (569 aa)    
Predicted Functional Partners:
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.897
SSRP1
Structure specific recognition protein 1.
   
 0.889
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.885
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.828
POLR2D
RNA polymerase II subunit D.
    
 0.798
CDC73
Cell division cycle 73.
   
 0.793
POLR2E
RNA polymerase II subunit E.
    
 0.787
POLR2G
RNA polymerase II subunit G.
    
 0.739
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.685
POLR2I
RNA polymerase II subunit I.
    
 0.669
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.