STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEPD1Endonuclease/exonuclease/phosphatase family domain containing 1. (569 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.994
CDC73
Cell division cycle 73.
   
 0.977
SSRP1
Structure specific recognition protein 1.
   
 0.972
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.972
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.969
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.968
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.960
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
  0.948
C6orf15
Chromosome 6 open reading frame 15.
   
 0.930
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.930
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.