STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC1Tetratricopeptide repeat domain 1. (293 aa)    
Predicted Functional Partners:
VAPA
VAMP associated protein A.
    
 
 0.951
RNF41
Ring finger protein 41.
    
   0.948
ENSCWAP00000016926
annotation not available
    
   0.862
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
   0.818
ENSCWAP00000001804
annotation not available
    
 
 0.816
ENSCWAP00000015267
annotation not available
    
 
 0.816
SPSB1
splA/ryanodine receptor domain and SOCS box containing 1.
    
   0.779
SPSB4
splA/ryanodine receptor domain and SOCS box containing 4.
    
   0.779
SPSB2
splA/ryanodine receptor domain and SOCS box containing 2.
    
   0.750
HSPA12B
Heat shock protein family A (Hsp70) member 12B.
    
 
 0.618
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.