Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (406 aa)    
Predicted Functional Partners:
AMFR
Autocrine motility factor receptor.
   
 
 0.797
SYVN1
Synoviolin 1.
   
 
 0.797
FAM8A1
Family with sequence similarity 8 member A1.
    
 
 0.697
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.690
RNF170
Ring finger protein 170.
      
 0.634
DNAJB9
DnaJ heat shock protein family (Hsp40) member B9.
   
  
 0.631
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.629
TMUB1
Transmembrane and ubiquitin like domain containing 1.
      
 0.614
ATF4
Activating transcription factor 4.
   
 
 0.603
RNF185
Ring finger protein 185.
      
 0.601
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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