STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCO1Beta-carotene oxygenase 1. (547 aa)    
Predicted Functional Partners:
RDH10
Retinol dehydrogenase 10.
     
 0.939
DHRS3
Dehydrogenase/reductase 3.
     
 0.938
ALDH1A2
Aldehyde dehydrogenase 1 family member A2.
   
 0.918
ALDH1A3
Aldehyde dehydrogenase 1 family member A3.
   
 0.916
ENSCWAP00000022934
annotation not available
     
 0.915
RDH13
Retinol dehydrogenase 13.
     
 0.912
ALDH1A1
Aldehyde dehydrogenase 1 family member A1.
   
 0.911
ENSCWAP00000029491
annotation not available
     
 0.911
RDH12
Retinol dehydrogenase 12.
     
 0.910
HSD17B6
Hydroxysteroid 17-beta dehydrogenase 6.
     
 0.905
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.