GAN protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

GAN

Gigaxonin. (597 aa)

Predicted Functional Partners:

INA

0.960

CUL3

0.953

VIM

0.938

TBCB

0.933

ENSCWAP00000018057

0.908

MAP1B

0.794

NEFH

0.793

NEFL

0.783

SDC1

0.769

CUL1

0.768

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL1	CUL3	ENSCWAP00000017203	ENSCWAP00000021356	Cullin 1.	Cullin 3.	0.971
CUL1	GAN	ENSCWAP00000017203	ENSCWAP00000004498	Cullin 1.	Gigaxonin.	0.768
CUL3	CUL1	ENSCWAP00000021356	ENSCWAP00000017203	Cullin 3.	Cullin 1.	0.971
CUL3	GAN	ENSCWAP00000021356	ENSCWAP00000004498	Cullin 3.	Gigaxonin.	0.953
ENSCWAP00000018057	GAN	ENSCWAP00000018057	ENSCWAP00000004498	annotation not available	Gigaxonin.	0.908
ENSCWAP00000018057	INA	ENSCWAP00000018057	ENSCWAP00000015767	annotation not available	Internexin neuronal intermediate filament protein alpha.	0.985
ENSCWAP00000018057	NEFL	ENSCWAP00000018057	ENSCWAP00000018009	annotation not available	Neurofilament light.	0.993
ENSCWAP00000018057	VIM	ENSCWAP00000018057	ENSCWAP00000020366	annotation not available	Vimentin.	0.888
GAN	CUL1	ENSCWAP00000004498	ENSCWAP00000017203	Gigaxonin.	Cullin 1.	0.768
GAN	CUL3	ENSCWAP00000004498	ENSCWAP00000021356	Gigaxonin.	Cullin 3.	0.953
GAN	ENSCWAP00000018057	ENSCWAP00000004498	ENSCWAP00000018057	Gigaxonin.	annotation not available	0.908
GAN	INA	ENSCWAP00000004498	ENSCWAP00000015767	Gigaxonin.	Internexin neuronal intermediate filament protein alpha.	0.960
GAN	MAP1B	ENSCWAP00000004498	ENSCWAP00000001940	Gigaxonin.	Microtubule associated protein 1B.	0.794
GAN	NEFH	ENSCWAP00000004498	ENSCWAP00000019415	Gigaxonin.	Neurofilament heavy.	0.793
GAN	NEFL	ENSCWAP00000004498	ENSCWAP00000018009	Gigaxonin.	Neurofilament light.	0.783
GAN	SDC1	ENSCWAP00000004498	ENSCWAP00000022164	Gigaxonin.	Syndecan 1.	0.769
GAN	TBCB	ENSCWAP00000004498	ENSCWAP00000004314	Gigaxonin.	Tubulin folding cofactor B.	0.933
GAN	VIM	ENSCWAP00000004498	ENSCWAP00000020366	Gigaxonin.	Vimentin.	0.938
INA	ENSCWAP00000018057	ENSCWAP00000015767	ENSCWAP00000018057	Internexin neuronal intermediate filament protein alpha.	annotation not available	0.985
INA	GAN	ENSCWAP00000015767	ENSCWAP00000004498	Internexin neuronal intermediate filament protein alpha.	Gigaxonin.	0.960