STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDFPeptide deformylase, mitochondrial. (249 aa)    
Predicted Functional Partners:
MTFMT
Mitochondrial methionyl-tRNA formyltransferase.
  
 0.937
CDCA8
Cell division cycle associated 8.
    
 
 0.860
MRPL21
Mitochondrial ribosomal protein L21.
  
 
 0.838
MRPL20
Mitochondrial ribosomal protein L20.
  
 
 0.825
MRPS16
Mitochondrial ribosomal protein S16.
  
   0.811
MRPS9
Mitochondrial ribosomal protein S9.
  
   0.804
MRPL27
Mitochondrial ribosomal protein L27.
  
   0.804
MRPL17
Mitochondrial ribosomal protein L17.
    
   0.802
MCOLN2
Mucolipin 2.
    
   0.800
MRPL9
Mitochondrial ribosomal protein L9.
  
   0.800
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.