STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPBP1GC-rich promoter binding protein 1. (493 aa)    
Predicted Functional Partners:
FNDC11
Fibronectin type III domain containing 11.
    
   0.938
PCMT1
protein-L-isoaspartate (D-aspartate) O-methyltransferase.
    
   0.767
CNOT1
CCR4-NOT transcription complex subunit 1.
   
   0.747
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 
 0.664
NNT
Nicotinamide nucleotide transhydrogenase.
      
 0.589
PSMC1
Proteasome 26S subunit, ATPase 1.
      
 0.588
EAPP
E2F associated phosphoprotein.
      
 0.573
OR10W1
Olfactory receptor family 10 subfamily W member 1.
      
 0.568
ENSCWAP00000007035
annotation not available
   
  
 0.563
SH3D19
SH3 domain containing 19.
      
 0.548
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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