Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSM2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (95 aa)    
Predicted Functional Partners:
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.999
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
LSM1
LSM1 homolog, mRNA degradation associated.
   
 0.999
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSCWAP00000015155
annotation not available
   
 0.998
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.998
ENSCWAP00000025909
annotation not available
   
 0.998
ENSCWAP00000024043
annotation not available
   
0.997
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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