Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ATG4DAutophagy related 4D cysteine peptidase. (469 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.975
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.964
MAP1LC3C
Microtubule associated protein 1 light chain 3 gamma.
   
 0.953
GABARAP
GABA type A receptor-associated protein.
   
 0.952
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.952
ENSCWAP00000006794
annotation not available
   
 0.947
ENSCWAP00000013840
annotation not available
   
 0.947
ATG4A
Autophagy related 4A cysteine peptidase.
    
 0.937
ATG4B
Autophagy related 4B cysteine peptidase.
    
 0.907
ATG3
Autophagy related 3.
   
 
 0.902
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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