STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM53Transmembrane protein 53. (278 aa)    
Predicted Functional Partners:
SMAD5
SMAD family member 5.
     
  0.890
SMAD9
SMAD family member 9.
     
  0.890
SMAD1
SMAD family member 1.
     
  0.890
NDC1
NDC1 transmembrane nucleoporin.
      
 0.887
TMEM9
Transmembrane protein 9.
      
 0.887
TMEM209
Transmembrane protein 209.
      
 0.887
OGFOD3
2-oxoglutarate and iron dependent oxygenase domain containing 3.
      
 0.887
TMEM214
Transmembrane protein 214.
      
 0.887
PIGB
Phosphatidylinositol glycan anchor biosynthesis class B.
      
 0.887
TMEM161A
Transmembrane protein 161A.
      
 0.887
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.