Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC85CCoiled-coil domain containing 85C. (419 aa)    
Predicted Functional Partners:
PPP1CB
Protein phosphatase 1 catalytic subunit beta.
    
 
 0.877
PPP1R13B
Protein phosphatase 1 regulatory subunit 13B.
   
 
 0.813
TJP1
Tight junction protein 1.
    
   0.794
ENSCWAP00000009797
annotation not available
    
 
 0.760
PPP1CC
Protein phosphatase 1 catalytic subunit gamma.
    
 
 0.760
ENSCWAP00000028687
annotation not available
    
 
 0.760
YAP1
Yes associated protein 1.
    
   0.755
WWTR1
WW domain containing transcription regulator 1.
    
   0.755
ARHGAP23
Rho GTPase activating protein 23.
    
 
 0.673
ARHGAP21
Rho GTPase activating protein 21.
    
 
 0.647
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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