STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCWAP00000005241annotation not available (523 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
    
 0.748
MYSM1
Myb like, SWIRM and MPN domains 1.
   
  0.634
BRCA1
BRCA1 DNA repair associated.
    
 
 0.547
GART
annotation not available
     
  0.503
ATM
ATM serine/threonine kinase.
    
 0.497
ARID4B
AT-rich interaction domain 4B.
    
 0.491
SUFU
SUFU negative regulator of hedgehog signaling.
    
 0.485
LIM2
Lens intrinsic membrane protein 2.
    
 0.438
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.433
BARD1
BRCA1 associated RING domain 1.
    
 0.431
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.