Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF8PHD finger protein 8. (1060 aa)    
Predicted Functional Partners:
TOPBP1
DNA topoisomerase II binding protein 1.
    
 
 0.904
CCNA2
Cyclin A2.
    
 
 0.898
SKP1
S-phase kinase associated protein 1.
    
 0.868
ZNF711
Zinc finger protein 711.
   
 
 0.851
SUV39H2
Suppressor of variegation 3-9 homolog 2.
    
 
 0.801
SUV39H1
Suppressor of variegation 3-9 homolog 1.
    
 
 0.801
ARID5B
AT-rich interaction domain 5B.
    
 0.791
NCAPD3
non-SMC condensin II complex subunit D3.
   
 
 0.784
NCAPG2
non-SMC condensin II complex subunit G2.
   
 
 0.784
H3-3A
H3.3 histone A.
    
 0.740
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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