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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF8PHD finger protein 8. (1060 aa)    
Predicted Functional Partners:
TOPBP1
DNA topoisomerase II binding protein 1.
    
   0.929
SKP1
S-phase kinase associated protein 1.
    
 0.857
GGA3
Golgi associated, gamma adaptin ear containing, ARF binding protein 3.
   
   0.793
ENSCWAP00000008101
annotation not available
   
    0.758
ARID4B
AT-rich interaction domain 4B.
     
 0.747
ENSCWAP00000013538
annotation not available
    
 0.745
H3-3A
H3.3 histone A.
    
 0.733
KDM3B
Lysine demethylase 3B.
   
 
 0.726
ENSCWAP00000028146
annotation not available
    
 0.726
ENSCWAP00000010636
annotation not available
    
 0.718
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.