Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
TRMT5tRNA methyltransferase 5. (504 aa)    
Predicted Functional Partners:
RFK
Riboflavin kinase.
     
 0.936
PSTPIP2
Proline-serine-threonine phosphatase interacting protein 2.
    
   0.891
TYW3
tRNA-yW synthesizing protein 3 homolog.
  
 
 0.814
TYW5
tRNA-yW synthesizing protein 5.
      
 0.801
TRMT10B
tRNA methyltransferase 10B.
   
  
 0.795
TRMT2B
tRNA methyltransferase 2 homolog B.
   
  
 0.790
ENSCWAP00000008684
annotation not available
   
 
 0.788
PUS10
Pseudouridine synthase 10.
   
  
 0.776
ATP23
ATP23 metallopeptidase and ATP synthase assembly factor homolog.
      
 0.754
DUS2
Dihydrouridine synthase 2.
   
  
 0.754
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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