Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VAMP8Vesicle associated membrane protein 8. (100 aa)    
Predicted Functional Partners:
SNAP23
Synaptosome associated protein 23.
   
 0.999
STX4
Syntaxin 4.
    
 0.999
SNAP29
Synaptosome associated protein 29.
   
 0.998
STX8
Syntaxin 8.
    
 0.997
STX7
Syntaxin 7.
    
 0.996
STX3
Syntaxin 3.
    
 0.996
STX6
Syntaxin 6.
    
 0.994
STX17
Syntaxin 17.
    
 0.992
STX2
Syntaxin 2.
    
 0.991
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
    
 0.991
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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