Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF40Ring finger protein 40. (1001 aa)    
Predicted Functional Partners:
RNF20
Ring finger protein 20.
  
0.999
WAC
WW domain containing adaptor with coiled-coil.
   
 0.989
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 0.972
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 0.971
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.956
CDC73
Cell division cycle 73.
   
 0.944
TP53
Tumor protein p53.
    
 
 0.943
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.918
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.911
UBE2U
Ubiquitin conjugating enzyme E2 U.
    
 0.901
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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