STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMUtRNA 5-methylaminomethyl-2-thiouridylate methyltransferase. (496 aa)    
Predicted Functional Partners:
MTO1
Mitochondrial tRNA translation optimization 1.
  
 0.928
GTPBP3
GTP binding protein 3, mitochondrial.
  
 0.926
GJB2
Gap junction protein beta 2.
      
 0.847
RFK
Riboflavin kinase.
  
 
 0.840
TRMT12
tRNA methyltransferase 12 homolog.
   
  
 0.822
NDUFA1
NADH:ubiquinone oxidoreductase subunit A1.
      
 0.806
TRMT2B
tRNA methyltransferase 2 homolog B.
  
  
 0.803
ERGIC1
Endoplasmic reticulum-golgi intermediate compartment 1.
  
 0.798
ERGIC3
ERGIC and golgi 3.
  
 0.798
ERGIC2
ERGIC and golgi 2.
  
 0.798
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.