Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHOXShort stature homeobox. (293 aa)    
Predicted Functional Partners:
PKNOX1
PBX/knotted 1 homeobox 1.
    
 
 0.768
SOX5
SRY-box transcription factor 5.
    
 
 0.692
FOXB1
Forkhead box B1.
   
  
 0.671
NME8
NME/NM23 family member 8.
    
   0.669
ENSCWAP00000017593
annotation not available
    
 
 0.666
LDB1
LIM domain binding 1.
    
 0.663
LDB2
LIM domain binding 2.
    
 0.663
SRF
Serum response factor.
    
 0.584
ENSCWAP00000005684
annotation not available
      
 0.582
BANP
BTG3 associated nuclear protein.
      
 0.560
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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