STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCAS1Breast carcinoma amplified sequence 1. (569 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
    
 0.966
KMT2E
Lysine methyltransferase 2E.
   
  0.861
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
  0.825
RB1
RB transcriptional corepressor 1.
    
 0.823
CDC73
Cell division cycle 73.
    
  0.810
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
  0.807
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
   
  0.807
TONSL
Tonsoku like, DNA repair protein.
    
 0.804
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
  0.799
PEX2
Peroxisomal biogenesis factor 2.
     
 0.798
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.