STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C5orf47Chromosome 5 open reading frame 47. (167 aa)    
Predicted Functional Partners:
C10orf120
Chromosome 10 open reading frame 120.
   
  
 0.617
LYPD4
LY6/PLAUR domain containing 4.
   
  
 0.608
CCDC27
Coiled-coil domain containing 27.
      
 0.604
ZPBP2
Zona pellucida binding protein 2.
   
  
 0.554
ZPLD1
Zona pellucida like domain containing 1.
      
 0.545
CBY2
Chibby family member 2.
      
 0.537
TRIM42
Tripartite motif containing 42.
   
  
 0.509
DMRTC2
DMRT like family C2.
      
 0.505
INSL6
Insulin like 6.
      
 0.485
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.