TRAV16 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRAV16

T cell receptor alpha variable 16. (131 aa)

Predicted Functional Partners:

TRBV28

0.955

ENSCWAP00000004842

0.835

ENSCWAP00000010423

0.826

ENSCWAP00000005338

0.811

HLA-DRA

0.764

JCHAIN

0.740

OR4E2

0.728

MAP3K2

0.723

MAP3K3

0.723

ENSCWAP00000021207

0.718

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000004842	ENSCWAP00000005338	ENSCWAP00000004842	ENSCWAP00000005338	annotation not available	annotation not available	0.434
ENSCWAP00000004842	ENSCWAP00000021207	ENSCWAP00000004842	ENSCWAP00000021207	annotation not available	annotation not available	0.537
ENSCWAP00000004842	HLA-DRA	ENSCWAP00000004842	ENSCWAP00000022301	annotation not available	Major histocompatibility complex, class II, DR alpha.	0.585
ENSCWAP00000004842	JCHAIN	ENSCWAP00000004842	ENSCWAP00000001224	annotation not available	Joining chain of multimeric IgA and IgM.	0.828
ENSCWAP00000004842	TRAV16	ENSCWAP00000004842	ENSCWAP00000005693	annotation not available	T cell receptor alpha variable 16.	0.835
ENSCWAP00000004842	TRBV28	ENSCWAP00000004842	ENSCWAP00000024818	annotation not available	T cell receptor beta variable 28.	0.916
ENSCWAP00000005338	ENSCWAP00000004842	ENSCWAP00000005338	ENSCWAP00000004842	annotation not available	annotation not available	0.434
ENSCWAP00000005338	ENSCWAP00000010423	ENSCWAP00000005338	ENSCWAP00000010423	annotation not available	annotation not available	0.434
ENSCWAP00000005338	ENSCWAP00000021207	ENSCWAP00000005338	ENSCWAP00000021207	annotation not available	annotation not available	0.539
ENSCWAP00000005338	HLA-DRA	ENSCWAP00000005338	ENSCWAP00000022301	annotation not available	Major histocompatibility complex, class II, DR alpha.	0.564
ENSCWAP00000005338	JCHAIN	ENSCWAP00000005338	ENSCWAP00000001224	annotation not available	Joining chain of multimeric IgA and IgM.	0.619
ENSCWAP00000005338	MAP3K2	ENSCWAP00000005338	ENSCWAP00000000226	annotation not available	Mitogen-activated protein kinase kinase kinase 2.	0.413
ENSCWAP00000005338	MAP3K3	ENSCWAP00000005338	ENSCWAP00000016625	annotation not available	Mitogen-activated protein kinase kinase kinase 3.	0.413
ENSCWAP00000005338	TRAV16	ENSCWAP00000005338	ENSCWAP00000005693	annotation not available	T cell receptor alpha variable 16.	0.811
ENSCWAP00000005338	TRBV28	ENSCWAP00000005338	ENSCWAP00000024818	annotation not available	T cell receptor beta variable 28.	0.460
ENSCWAP00000010423	ENSCWAP00000005338	ENSCWAP00000010423	ENSCWAP00000005338	annotation not available	annotation not available	0.434
ENSCWAP00000010423	ENSCWAP00000021207	ENSCWAP00000010423	ENSCWAP00000021207	annotation not available	annotation not available	0.535
ENSCWAP00000010423	HLA-DRA	ENSCWAP00000010423	ENSCWAP00000022301	annotation not available	Major histocompatibility complex, class II, DR alpha.	0.585
ENSCWAP00000010423	JCHAIN	ENSCWAP00000010423	ENSCWAP00000001224	annotation not available	Joining chain of multimeric IgA and IgM.	0.719
ENSCWAP00000010423	TRAV16	ENSCWAP00000010423	ENSCWAP00000005693	annotation not available	T cell receptor alpha variable 16.	0.826