STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC38Tetratricopeptide repeat domain 38. (469 aa)    
Predicted Functional Partners:
FAM118A
Family with sequence similarity 118 member A.
      
 0.753
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
      
 0.747
ZCCHC17
Zinc finger CCHC-type containing 17.
      
 0.687
CLIP3
CAP-Gly domain containing linker protein 3.
      
 0.676
RCAN3
RCAN family member 3.
      
 0.658
ENOSF1
Enolase superfamily member 1.
      
 0.639
PTER
Phosphotriesterase related.
      
 0.602
PLXDC2
Plexin domain containing 2.
      
 0.600
SLC39A7
Solute carrier family 39 member 7.
      
 0.572
IREB2
Iron responsive element binding protein 2.
      
 0.556
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.